![]() ![]() It can handle UAC privilege elevation and bypass UAC prompts, start multiple commands in the specified order, and much more. Just thought I would contribute this since figuring it all out was a super confusing process consisting of a few hundred google searches. It's likely it was just me, but maybe there are a few other people like me who will benefit from being able to avoid the process. Probably most people do not have that luxury. Install Updates and Required Packages sudo apt-get updateĮxport To Path And Refresh export PATH="$PATH:/usr/bin/bcftools-1.9"Įxport PATH="$PATH:/usr/bin/samtools-1.9"Īs mentioned in the previous, similar comment, you get old versions of htslib / samtools / bcftools this way. The apt repository only ports the bioionformatics tools just before the release of that Ubuntu software version. Ubuntu LTS 22.04 htslib / samtools / bcftools v1.13.Ubuntu LTS 20.04 htslib / samtools / bcftools v1.10.Ubuntu LTS 18.04 htslib / samtools / bcftools v1.7.For the most part, newer versions of htslib / samtools / bcftools can be "backported" to the older OS releases.įor example, using your instructions on these platforms gets you: The original script is to get the latest version (at that time) to install and operate. And even then, may not update to the latest LTS. ![]() The next LTS is not scheduled until April 2024. If you do not care about LTS, I believe 23.04 due out shortly has the latest htslib 1.16.1. ![]() Our pipeline requires 1.15.1 due to bug fixes and feature enhancements we depend on that are not in earlier versions. For an explanation of the contents and the Maybe the above should be edited into the original post to make it clearer why the tutorial is needed.Binaries (64 bit), all dlls needed, the examples, Upgrading Ubuntu is beyond the scope of this site. ![]()
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